subtom_multiref_rand_class_motl

Randomizes a given number of classes in a motive list.

This MOTL manipulation script uses one MATLAB compiled scripts below:

• subtom_rand_class_motl

Options

Directories

scratch_dir

Absolute path to the folder with the input to be processed. Other paths are relative to this one.

mcr_cache_dir

Absolute path to MCR directory for the processing.

exec_dir

Directory for executables

Variables

rand_exec

Randomize Motive List executable.

File Options

input_motl_fn

Relative path and name of the input motivelist to be randomized in class.

output_motl_fn

Relative path and name of the output motivelist.

Randomize MOTL Options

num_classes

The number of classes to split the initial motive list into. The classes will be assigned randomly evenly within the valid particles, (non-negative class values excluding class 2), with the class number starting at 3 to not interfere with the classes 1 and 2 which are reserved for AV3’s thresholding process.

Example

scratch_dir="${PWD}"

mcr_cache_dir="${scratch_dir}/mcr"

exec_dir="/net/dstore2/teraraid/dmorado/software/subTOM/bin"

rand_exec="${exec_dir}/classification/multiref/subtom_rand_class_motl

input_motl_fn="combinedmotl/allmotl_1.em"

output_motl_fn="combinedmotl/allmotl_multiref_1.em"

num_classes=2