subtom_random_subset_motl

Draws a random subset from a given MOTL file.

This MOTL manipulation script uses one MATLAB compiled scripts below:

subtom_random_subset_motl

Options

Directories

scratch_dir: Absolute path to the folder with the input to be processed. Other paths are relative to this one.
mcr_cache_dir: Absolute path to MCR directory for the processing.
exec_dir: Directory for executables

Variables

random_subset_motl_exec: Random subset motive list executable

File Options

input_motl_fn: Relative path and name of the input MOTL file to draw the subset from.
output_motl_fn: Relative path and name of the output MOTL file.

Subset Options

subset_size: How many particles to be included in the subset.
subset_row: The following describes a field in the MOTL to equally distribute particles of the subset amongst. Such that if subset_row was the tomogram row (7), and there were ten tomograms described in the motive list, then the subset of 1000 particles would have 100 particles from each tomogram. If there are more unique values than the subset size then the field is not taken into account.

Example

scratch_dir="${PWD}"

mcr_cache_dir="${scratch_dir}/mcr"

exec_dir="/net/dstore2/teraraid/dmorado/software/subTOM/bin"

random_subset_motl_exec="${exec_dir}/MOTL/subtom_random_subset_motl"

input_motl_fn="combinedmotl/allmotl_1.em"

output_motl_fn="combinedmotl/s5kmotl_1.em"

subset_size=5000

subset_row=7