subtom_plot_scanned_angles
Creates a graphic of local search rotations.
subtom_plot_scanned_angles(
'psi_angle_step', psi_angle_step (0),
'psi_angle_shells', psi_angl_shells (0),
'phi_angle_step', phi_angle_step (0),
'phi_angle_shells', phi_angle_shells (0),
'initial_phi', initial_phi (0),
'initial_psi', initial_psi (0),
'initial_theta', initial_theta (0),
'angle_fmt', angle_fmt ('degrees'),
'marker_size', marker_size (0.1),
'output_fn_prefix', output_fn_prefix (''))
Takes in the local search parameters used in subTOM psi_angle_step,
psi_angle_shells, phi_angle_step, and phi_angle_shells; then
produces a figure showing the angles that will be searched using an arrow
marker. The angles are given in either radians or degrees depending on
angle_fmt. The marker represents the X-axis after rotation and placed on the
unit sphere. The initial marker position is at the north pole of the unit
sphere. The size of the marker is determined by marker_size. The rotations
can also be displayed centered on an initial rotation given by initial_phi,
initial_psi, and initial_theta. If it is non-empty the figure will be
written out in MATLAB figure, PDF and PNG format using the filename prefix
output_fn_prefix.
Example
subtom_plot_scanned_angles(...
'psi_angle_step', 6, ...
'psi_angle_shells', 7, ...
'phi_angle_step', 6, ...
'phi_angle_shells', 7, ...
'initial_phi', 0, ...
'initial_psi', 0, ...
'initial_theta', 0, ...
'angle_fmt', 'degrees', ...
'marker_size', 0.02, ...
'output_fn_prefix', 'alignment_1');